6N5V image
Deposition Date 2018-11-22
Release Date 2019-11-27
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6N5V
Keywords:
Title:
Crystal Structure of Strictosidine in complex with 1H-indole-4-ethanamine
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Strictosidine synthase
Gene (Uniprot):STR1
Chain IDs:A, B
Chain Length:316
Number of Molecules:2
Biological Source:Rauvolfia serpentina
Ligand Molecules
Primary Citation
The structure of Rauvolfia serpentina strictosidine synthase is a novel six-bladed beta-propeller fold in plant proteins.
Plant Cell 18 907 920 (2006)
PMID: 16531499 DOI: 10.1105/tpc.105.038018

Abstact

The enzyme strictosidine synthase (STR1) from the Indian medicinal plant Rauvolfia serpentina is of primary importance for the biosynthetic pathway of the indole alkaloid ajmaline. Moreover, STR1 initiates all biosynthetic pathways leading to the entire monoterpenoid indole alkaloid family representing an enormous structural variety of approximately 2000 compounds in higher plants. The crystal structures of STR1 in complex with its natural substrates tryptamine and secologanin provide structural understanding of the observed substrate preference and identify residues lining the active site surface that contact the substrates. STR1 catalyzes a Pictet-Spengler-type reaction and represents a novel six-bladed beta-propeller fold in plant proteins. Structure-based sequence alignment revealed a common repetitive sequence motif (three hydrophobic residues are followed by a small residue and a hydrophilic residue), indicating a possible evolutionary relationship between STR1 and several sequence-unrelated six-bladed beta-propeller structures. Structural analysis and site-directed mutagenesis experiments demonstrate the essential role of Glu-309 in catalysis. The data will aid in deciphering the details of the reaction mechanism of STR1 as well as other members of this enzyme family.

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Primary Citation of related structures