6N50 image
Deposition Date 2018-11-20
Release Date 2019-01-23
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6N50
Title:
Metabotropic Glutamate Receptor 5 Extracellular Domain in Complex with Nb43 and L-quisqualic acid
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Lama glama (Taxon ID: 9844)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.75 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
I 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Metabotropic glutamate receptor 5
Gene (Uniprot):GRM5
Chain IDs:A, B, C
Chain Length:596
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nanobody 43
Chain IDs:D (auth: E)
Chain Length:123
Number of Molecules:1
Biological Source:Lama glama
Primary Citation
Structural insights into the activation of metabotropic glutamate receptors.
Nature 566 79 84 (2019)
PMID: 30675062 DOI: 10.1038/s41586-019-0881-4

Abstact

Metabotropic glutamate receptors are family C G-protein-coupled receptors. They form obligate dimers and possess extracellular ligand-binding Venus flytrap domains, which are linked by cysteine-rich domains to their 7-transmembrane domains. Spectroscopic studies show that signalling is a dynamic process, in which large-scale conformational changes underlie the transmission of signals from the extracellular Venus flytraps to the G protein-coupling domains-the 7-transmembrane domains-in the membrane. Here, using a combination of X-ray crystallography, cryo-electron microscopy and signalling studies, we present a structural framework for the activation mechanism of metabotropic glutamate receptor subtype 5. Our results show that agonist binding at the Venus flytraps leads to a compaction of the intersubunit dimer interface, thereby bringing the cysteine-rich domains into close proximity. Interactions between the cysteine-rich domains and the second extracellular loops of the receptor enable the rigid-body repositioning of the 7-transmembrane domains, which come into contact with each other to initiate signalling.

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