6N4Y image
Entry Detail
PDB ID:
6N4Y
Title:
Metabotropic Glutamate Receptor 5 Extracellular Domain with Nb43
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-11-20
Release Date:
2019-01-23
Method Details:
Experimental Method:
Resolution:
3.26 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Metabotropic glutamate receptor 5
Chain IDs:A, B, C, D
Chain Length:596
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nanobody 43
Chain IDs:E, F, G, H
Chain Length:123
Number of Molecules:4
Biological Source:Lama glama
Ligand Molecules
Primary Citation
Structural insights into the activation of metabotropic glutamate receptors.
Nature 566 79 84 (2019)
PMID: 30675062 DOI: 10.1038/s41586-019-0881-4

Abstact

Metabotropic glutamate receptors are family C G-protein-coupled receptors. They form obligate dimers and possess extracellular ligand-binding Venus flytrap domains, which are linked by cysteine-rich domains to their 7-transmembrane domains. Spectroscopic studies show that signalling is a dynamic process, in which large-scale conformational changes underlie the transmission of signals from the extracellular Venus flytraps to the G protein-coupling domains-the 7-transmembrane domains-in the membrane. Here, using a combination of X-ray crystallography, cryo-electron microscopy and signalling studies, we present a structural framework for the activation mechanism of metabotropic glutamate receptor subtype 5. Our results show that agonist binding at the Venus flytraps leads to a compaction of the intersubunit dimer interface, thereby bringing the cysteine-rich domains into close proximity. Interactions between the cysteine-rich domains and the second extracellular loops of the receptor enable the rigid-body repositioning of the 7-transmembrane domains, which come into contact with each other to initiate signalling.

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Primary Citation of related structures