6N4M image
Deposition Date 2018-11-19
Release Date 2019-02-13
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6N4M
Keywords:
Title:
IDS-oxidized ADP-bound form of the nitrogenase Fe-protein from A. vinelandii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nitrogenase iron protein 1
Gene (Uniprot):nifH1
Chain IDs:A
Chain Length:289
Number of Molecules:1
Biological Source:Azotobacter vinelandii
Primary Citation
Site-Specific Oxidation State Assignments of the Iron Atoms in the [4Fe:4S]2+/1+/0States of the Nitrogenase Fe-Protein.
Angew. Chem. Int. Ed. Engl. 58 3894 3897 (2019)
PMID: 30698901 DOI: 10.1002/anie.201813966

Abstact

The nitrogenase iron protein (Fe-protein) contains an unusual [4Fe:4S] iron-sulphur cluster that is stable in three oxidation states: 2+, 1+, and 0. Here, we use spatially resolved anomalous dispersion (SpReAD) refinement to determine oxidation assignments for the individual irons for each state. Additionally, we report the 1.13-Å resolution structure for the ADP bound Fe-protein, the highest resolution Fe-protein structure presently determined. In the dithionite-reduced [4Fe:4S]1+ state, our analysis identifies a solvent exposed, delocalized Fe2.5+ pair and a buried Fe2+ pair. We propose that ATP binding by the Fe-protein promotes an internal redox rearrangement such that the solvent-exposed Fe pair becomes reduced, thereby facilitating electron transfer to the nitrogenase molybdenum iron-protein. In the [4Fe:4S]0 and [4Fe:4S]2+ states, the SpReAD analysis supports oxidation states assignments for all irons in these clusters of Fe2+ and valence delocalized Fe2.5+ , respectively.

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