6N2X image
Deposition Date 2018-11-14
Release Date 2018-11-28
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6N2X
Keywords:
Title:
Anti-HIV-1 Fab 2G12 + Man9 re-refinement
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fab 2G12 heavy chain
Chain IDs:B (auth: H), D (auth: M)
Chain Length:224
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab 2G12 light chain
Chain IDs:A (auth: L), C (auth: K)
Chain Length:213
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Antibody domain exchange is an immunological solution to carbohydrate cluster recognition.
Science 300 2065 2071 (2003)
PMID: 12829775 DOI: 10.1126/science.1083182

Abstact

Human antibody 2G12 neutralizes a broad range of human immunodeficiency virus type 1 (HIV-1) isolates by binding an unusually dense cluster of carbohydrate moieties on the "silent" face of the gp120 envelope glycoprotein. Crystal structures of Fab 2G12 and its complexes with the disaccharide Manalpha1-2Man and with the oligosaccharide Man9GlcNAc2 revealed that two Fabs assemble into an interlocked VH domain-swapped dimer. Further biochemical, biophysical, and mutagenesis data strongly support a Fab-dimerized antibody as the prevalent form that recognizes gp120. The extraordinary configuration of this antibody provides an extended surface, with newly described binding sites, for multivalent interaction with a conserved cluster of oligomannose type sugars on the surface of gp120. The unique interdigitation of Fab domains within an antibody uncovers a previously unappreciated mechanism for high-affinity recognition of carbohydrate or other repeating epitopes on cell or microbial surfaces.

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Primary Citation of related structures