6N2W image
Deposition Date 2018-11-14
Release Date 2020-05-13
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6N2W
Title:
The structure of Stable-5-Lipoxygenase bound to NDGA
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.71 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Arachidonate 5-lipoxygenase
Gene (Uniprot):ALOX5
Chain IDs:A, B
Chain Length:691
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural and mechanistic insights into 5-lipoxygenase inhibition by natural products.
Nat.Chem.Biol. 16 783 790 (2020)
PMID: 32393899 DOI: 10.1038/s41589-020-0544-7

Abstact

Leukotrienes (LT) are lipid mediators of the inflammatory response that are linked to asthma and atherosclerosis. LT biosynthesis is initiated by 5-lipoxygenase (5-LOX) with the assistance of the substrate-binding 5-LOX-activating protein at the nuclear membrane. Here, we contrast the structural and functional consequences of the binding of two natural product inhibitors of 5-LOX. The redox-type inhibitor nordihydroguaiaretic acid (NDGA) is lodged in the 5-LOX active site, now fully exposed by disordering of the helix that caps it in the apo-enzyme. In contrast, the allosteric inhibitor 3-acetyl-11-keto-beta-boswellic acid (AKBA) from frankincense wedges between the membrane-binding and catalytic domains of 5-LOX, some 30 Å from the catalytic iron. While enzyme inhibition by NDGA is robust, AKBA promotes a shift in the regiospecificity, evident in human embryonic kidney 293 cells and in primary immune cells expressing 5-LOX. Our results suggest a new approach to isoform-specific 5-LOX inhibitor development through exploitation of an allosteric site in 5-LOX.

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