6N16 image
Deposition Date 2018-11-08
Release Date 2019-07-31
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6N16
Keywords:
Title:
Vaccine-elicited NHP FP-targeting neutralizing antibody 0PV-b.01 in complex with HIV fusion peptide (residue 512-519)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:antibody 0PV-b.01 Fab heavy chain
Chain IDs:A, C (auth: H), E (auth: K), G (auth: C)
Chain Length:223
Number of Molecules:4
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:antibody 0PV-b.01 Fab light chain
Chain IDs:B, D (auth: J), F (auth: L), H (auth: D)
Chain Length:217
Number of Molecules:4
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:HIV fusion peptide (512-519)
Chain IDs:I (auth: E), J (auth: F), K (auth: G), L (auth: I)
Chain Length:8
Number of Molecules:4
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation

Abstact

The vaccine-mediated elicitation of antibodies (Abs) capable of neutralizing diverse HIV-1 strains has been a long-standing goal. To understand how broadly neutralizing antibodies (bNAbs) can be elicited, we identified, characterized, and tracked five neutralizing Ab lineages targeting the HIV-1-fusion peptide (FP) in vaccinated macaques over time. Genetic and structural analyses revealed two of these lineages to belong to a reproducible class capable of neutralizing up to 59% of 208 diverse viral strains. B cell analysis indicated each of the five lineages to have been initiated and expanded by FP-carrier priming, with envelope (Env)-trimer boosts inducing cross-reactive neutralization. These Abs had binding-energy hotspots focused on FP, whereas several FP-directed Abs induced by immunization with Env trimer-only were less FP-focused and less broadly neutralizing. Priming with a conserved subregion, such as FP, can thus induce Abs with binding-energy hotspots coincident with the target subregion and capable of broad neutralization.

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Primary Citation of related structures