6MXX image
Deposition Date 2018-10-31
Release Date 2019-11-27
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6MXX
Keywords:
Title:
Structure of 53BP1 tandem Tudor domains in complex with small molecule UNC2991
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TP53-binding protein 1
Gene (Uniprot):TP53BP1
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:123
Number of Molecules:10
Biological Source:Homo sapiens
Primary Citation
An autoinhibited state of 53BP1 revealed by small molecule antagonists and protein engineering.
Nat Commun 14 6091 6091 (2023)
PMID: 37773238 DOI: 10.1038/s41467-023-41821-6

Abstact

The recruitment of 53BP1 to chromatin, mediated by its recognition of histone H4 dimethylated at lysine 20 (H4K20me2), is important for DNA double-strand break repair. Using a series of small molecule antagonists, we demonstrate a conformational equilibrium between an open and a pre-existing lowly populated closed state of 53BP1 in which the H4K20me2 binding surface is buried at the interface between two interacting 53BP1 molecules. In cells, these antagonists inhibit the chromatin recruitment of wild type 53BP1, but do not affect 53BP1 variants unable to access the closed conformation despite preservation of the H4K20me2 binding site. Thus, this inhibition operates by shifting the conformational equilibrium toward the closed state. Our work therefore identifies an auto-associated form of 53BP1-autoinhibited for chromatin binding-that can be stabilized by small molecule ligands encapsulated between two 53BP1 protomers. Such ligands are valuable research tools to study the function of 53BP1 and have the potential to facilitate the development of new drugs for cancer therapy.

Legend

Protein

Chemical

Disease

Primary Citation of related structures