6MU2 image
Entry Detail
PDB ID:
6MU2
EMDB ID:
Title:
Structure of full-length IP3R1 channel in the Apo-state
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-10-22
Release Date:
2018-12-05
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Inositol 1,4,5-trisphosphate receptor type 1
Chain IDs:A (auth: B), B (auth: A), C (auth: D), D (auth: C)
Chain Length:2750
Number of Molecules:4
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Cryo-EM reveals ligand induced allostery underlying InsP3R channel gating.
Cell Res. 28 1158 1170 (2018)
PMID: 30470765 DOI: 10.1038/s41422-018-0108-5

Abstact

Inositol-1,4,5-trisphosphate receptors (InsP3Rs) are cation channels that mobilize Ca2+ from intracellular stores in response to a wide range of cellular stimuli. The paradigm of InsP3R activation is the coupled interplay between binding of InsP3 and Ca2+ that switches the ion conduction pathway between closed and open states to enable the passage of Ca2+ through the channel. However, the molecular mechanism of how the receptor senses and decodes ligand-binding signals into gating motion remains unknown. Here, we present the electron cryo-microscopy structure of InsP3R1 from rat cerebellum determined to 4.1 Å resolution in the presence of activating concentrations of Ca2+ and adenophostin A (AdA), a structural mimetic of InsP3 and the most potent known agonist of the channel. Comparison with the 3.9 Å-resolution structure of InsP3R1 in the Apo-state, also reported herein, reveals the binding arrangement of AdA in the tetrameric channel assembly and striking ligand-induced conformational rearrangements within cytoplasmic domains coupled to the dilation of a hydrophobic constriction at the gate. Together, our results provide critical insights into the mechanistic principles by which ligand-binding allosterically gates InsP3R channel.

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Primary Citation of related structures