6MTP image
Entry Detail
PDB ID:
6MTP
Keywords:
Title:
Crystal structure of VRC42.04 Fab in complex with gp41 peptide
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2018-10-21
Release Date:
2019-03-27
Method Details:
Experimental Method:
Resolution:
2.04 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Antibody VRC42.04 Fab heavy chain
Chain IDs:B (auth: H), D (auth: A)
Chain Length:225
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Antibody VRC42.04 Fab light chain
Chain IDs:A (auth: L), C (auth: B)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:RV217 founder virus gp41 peptide
Chain IDs:E (auth: P), F (auth: Q)
Chain Length:29
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Primary Citation

Abstact

Lineage-based vaccine design is an attractive approach for eliciting broadly neutralizing antibodies (bNAbs) against HIV-1. However, most bNAb lineages studied to date have features indicative of unusual recombination and/or development. From an individual in the prospective RV217 cohort, we identified three lineages of bNAbs targeting the membrane-proximal external region (MPER) of the HIV-1 envelope. Antibodies RV217-VRC42.01, -VRC43.01, and -VRC46.01 used distinct modes of recognition and neutralized 96%, 62%, and 30%, respectively, of a 208-strain virus panel. All three lineages had modest levels of somatic hypermutation and normal antibody-loop lengths and were initiated by the founder virus MPER. The broadest lineage, VRC42, was similar to the known bNAb 4E10. A multimeric immunogen based on the founder MPER activated B cells bearing the unmutated common ancestor of VRC42, with modest maturation of early VRC42 intermediates imparting neutralization breadth. These features suggest that VRC42 may be a promising template for lineage-based vaccine design.

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Primary Citation of related structures