6MTN image
Entry Detail
PDB ID:
6MTN
Title:
Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to Small Molecule HIV-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2018-10-20
Release Date:
2019-01-16
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp160
Mutations:I559P, A605C
Chain IDs:A (auth: B)
Chain Length:153
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:35O22 scFv heavy chain portion
Mutations:E10T, L11T, K12T, A16S, I68N, K83T, F84S,
Chain IDs:B (auth: D)
Chain Length:134
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:35O22 scFv light chain portion
Chain IDs:C (auth: E)
Chain Length:114
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp160
Mutations:N137A
Chain IDs:D (auth: G)
Chain Length:481
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:3H109L Fab heavy chain
Chain IDs:E (auth: H)
Chain Length:244
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:3H109L Fab light chain
Mutations:E184M, S188M
Chain IDs:F (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Lattice engineering enables definition of molecular features allowing for potent small-molecule inhibition of HIV-1 entry.
Nat Commun 10 47 47 (2019)
PMID: 30604750 DOI: 10.1038/s41467-018-07851-1

Abstact

Diverse entry inhibitors targeting the gp120 subunit of the HIV-1 envelope (Env) trimer have been developed including BMS-626529, also called temsavir, a prodrug version of which is currently in phase III clinical trials. Here we report the characterization of a panel of small-molecule inhibitors including BMS-818251, which we show to be >10-fold more potent than temsavir on a cross-clade panel of 208-HIV-1 strains, as well as the engineering of a crystal lattice to enable structure determination of the interaction between these inhibitors and the HIV-1 Env trimer at higher resolution. By altering crystallization lattice chaperones, we identify a lattice with both improved diffraction and robust co-crystallization of HIV-1 Env trimers from different clades complexed to entry inhibitors with a range of binding affinities. The improved diffraction reveals BMS-818251 to utilize functional groups that interact with gp120 residues from the conserved β20-β21 hairpin to improve potency.

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