6MRQ image
Deposition Date 2018-10-15
Release Date 2020-07-01
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6MRQ
Title:
Structure of ToPI1 inhibitor from Tityus obscurus scorpion venom in complex with trypsin
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Tityus (Taxon ID: 6886)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.29 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cationic trypsin
Gene (Uniprot):PRSS1
Chain IDs:A
Chain Length:237
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:inhibitor from Tityus obscurus scorpion venom (TopI1)
Chain IDs:B (auth: I)
Chain Length:32
Number of Molecules:1
Biological Source:Tityus
Primary Citation
Head-to-Tail Cyclization after Interaction with Trypsin: A Scorpion Venom Peptide that Resembles Plant Cyclotides.
J.Med.Chem. 63 9500 9511 (2020)
PMID: 32787139 DOI: 10.1021/acs.jmedchem.0c00686

Abstact

Peptidase inhibitors (PIs) have been broadly studied due to their wide therapeutic potential for human diseases. A potent trypsin inhibitor from Tityus obscurus scorpion venom was characterized and named ToPI1, with 33 amino acid residues and three disulfide bonds. The X-ray structure of the ToPI1:trypsin complex, in association with the mass spectrometry data, indicate a sequential set of events: the complex formation with the inhibitor Lys32 in the trypsin S1 pocket, the inhibitor C-terminal residue Ser33 cleavage, and the cyclization of ToPI1 via a peptide bond between residues Ile1 and Lys32. Kinetic and thermodynamic characterization of the complex was obtained. ToPI1 shares no sequence similarity with other PIs characterized to date and is the first PI with CS-α/β motif described from animal venoms. In its cyclic form, it shares structural similarities with plant cyclotides that also inhibit trypsin. These results bring new insights for studies with venom compounds, PIs, and drug design.

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Primary Citation of related structures