6MP5 image
Entry Detail
PDB ID:
6MP5
Title:
Crystal structure of native human sulfide:quinone oxidoreductase
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-10-05
Release Date:
2019-04-10
Method Details:
Experimental Method:
Resolution:
2.99 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Sulfide:quinone oxidoreductase, mitochondrial
Chain IDs:A, B, C, D
Chain Length:413
Number of Molecules:4
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSS A CYS modified residue
Ligand Molecules
Primary Citation
X-Ray Structure of Human Sulfide:Quinone Oxidoreductase: Insights into the Mechanism of Mitochondrial Hydrogen Sulfide Oxidation.
Structure 27 794 805.e4 (2019)
PMID: 30905673 DOI: 10.1016/j.str.2019.03.002

Abstact

Hydrogen sulfide (H2S) is a gasotransmitter exhibiting pivotal functions in diverse biological processes, including activation of multiple cardioprotective pathways. Sulfide:quinone oxidoreductase (SQOR) is an integral membrane flavoprotein that catalyzes the first step in the mitochondrial metabolism of H2S. As such, it plays a critical role in controlling physiological levels of the gasotransmitter and has attracted keen interest as a potential drug target. We report the crystal structure of human SQOR, unraveling the molecular basis for the enzyme's ability to catalyze sulfane sulfur transfer reactions with structurally diverse acceptors. We demonstrate that human SQOR contains unique features: an electropositive surface depression implicated as a binding site for sulfane sulfur acceptors and postulated to funnel negatively charged substrates to a hydrophilic H2S-oxidizing active site, which is connected to a hydrophobic internal tunnel that binds coenzyme Q. These findings support a proposed model for catalysis and open the door for structure-based drug design.

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