6MN7 image
Deposition Date 2018-10-01
Release Date 2019-03-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6MN7
Keywords:
Title:
Cryo-EM structure of BG505.SOSIP.664 in complex with BF520.1 antigen binding fragment
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope Glycoprotein gp120
Gene (Uniprot):env
Chain IDs:A, C, D
Chain Length:476
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope Glycoprotein gp41
Gene (Uniprot):env
Chain IDs:B, E, F
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:BF520.1 Fab variable region
Chain IDs:G, H, I
Chain Length:236
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage.
Nat Commun 10 2190 2190 (2019)
PMID: 31097697 DOI: 10.1038/s41467-019-09481-7

Abstact

HIV-infected infants develop broadly neutralizing plasma responses with more rapid kinetics than adults, suggesting the ontogeny of infant responses could better inform a path to achievable vaccine targets. Here we reconstruct the developmental lineage of BF520.1, an infant-derived HIV-specific broadly neutralizing antibody (bnAb), using computational methods developed specifically for this purpose. We find that the BF520.1 inferred naive precursor binds HIV Env. We also show that heterologous cross-clade neutralizing activity evolved in the infant within six months of infection and that, ultimately, only 2% SHM is needed to achieve the full breadth of the mature antibody. Mutagenesis and structural analyses reveal that, for this infant bnAb, substitutions in the kappa chain were critical for activity, particularly in CDRL1. Overall, the developmental pathway of this infant antibody includes features distinct from adult antibodies, including several that may be amenable to better vaccine responses.

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Primary Citation of related structures