6MK8 image
Deposition Date 2018-09-25
Release Date 2019-06-19
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6MK8
Title:
NMR structure of Database designed and improved anti-Staphylococcal peptide DFT503 bound to micelles
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
5
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Anti-Staphylococcal peptide DFT503
Chain IDs:A
Chain Length:14
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Low cationicity is important for systemic in vivo efficacy of database-derived peptides against drug-resistant Gram-positive pathogens.
Proc.Natl.Acad.Sci.USA 116 13517 13522 (2019)
PMID: 31209048 DOI: 10.1073/pnas.1821410116

Abstact

As bacterial resistance to traditional antibiotics continues to emerge, new alternatives are urgently needed. Antimicrobial peptides (AMPs) are important candidates. However, how AMPs are designed with in vivo efficacy is poorly understood. Our study was designed to understand structural moieties of cationic peptides that would lead to their successful use as antibacterial agents. In contrast to the common perception, serum binding and peptide stability were not the major reasons for in vivo failure in our studies. Rather, our systematic study of a series of peptides with varying lysines revealed the significance of low cationicity for systemic in vivo efficacy against Gram-positive pathogens. We propose that peptides with biased amino acid compositions are not favored to associate with multiple host factors and are more likely to show in vivo efficacy. Thus, our results uncover a useful design strategy for developing potent peptides against multidrug-resistant pathogens.

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Primary Citation of related structures