6MET image
Deposition Date 2018-09-07
Release Date 2018-12-12
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6MET
Title:
Structural basis of coreceptor recognition by HIV-1 envelope spike
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD4
Gene (Uniprot):CD4
Chain IDs:B (auth: A)
Chain Length:363
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:C-C chemokine receptor type 5
Gene (Uniprot):CCR5
Chain IDs:C (auth: B)
Chain Length:313
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Chain IDs:A (auth: G)
Chain Length:461
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS C TYR modified residue
Primary Citation
Structural basis of coreceptor recognition by HIV-1 envelope spike.
Nature 565 318 323 (2018)
PMID: 30542158 DOI: 10.1038/s41586-018-0804-9

Abstact

HIV-1 envelope glycoprotein (Env), which consists of trimeric (gp160)3 cleaved to (gp120 and gp41)3, interacts with the primary receptor CD4 and a coreceptor (such as chemokine receptor CCR5) to fuse viral and target-cell membranes. The gp120-coreceptor interaction has previously been proposed as the most crucial trigger for unleashing the fusogenic potential of gp41. Here we report a cryo-electron microscopy structure of a full-length gp120 in complex with soluble CD4 and unmodified human CCR5, at 3.9 Å resolution. The V3 loop of gp120 inserts into the chemokine-binding pocket formed by seven transmembrane helices of CCR5, and the N terminus of CCR5 contacts the CD4-induced bridging sheet of gp120. CCR5 induces no obvious allosteric changes in gp120 that can propagate to gp41; it does bring the Env trimer close to the target membrane. The N terminus of gp120, which is gripped by gp41 in the pre-fusion or CD4-bound Env, flips back in the CCR5-bound conformation and may irreversibly destabilize gp41 to initiate fusion. The coreceptor probably functions by stabilizing and anchoring the CD4-induced conformation of Env near the cell membrane. These results advance our understanding of HIV-1 entry into host cells and may guide the development of vaccines and therapeutic agents.

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Primary Citation of related structures