6MEM image
Deposition Date 2018-09-06
Release Date 2018-11-21
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6MEM
Keywords:
Title:
A unique supramolecular organization of photosystem I in the moss Physcomitrella patens
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
11.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 1
Chain IDs:A
Chain Length:193
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 5
Chain IDs:B
Chain Length:195
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 3
Chain IDs:C
Chain Length:208
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 7
Chain IDs:D
Chain Length:206
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 4
Chain IDs:E
Chain Length:221
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 9
Chain IDs:F
Chain Length:218
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 8
Chain IDs:G
Chain Length:219
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 2
Chain IDs:H
Chain Length:198
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 6
Chain IDs:I
Chain Length:196
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaA
Chain IDs:J
Chain Length:743
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 10
Chain IDs:K
Chain Length:223
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaB
Chain IDs:L
Chain Length:733
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 11
Chain IDs:M
Chain Length:224
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaC
Chain IDs:N
Chain Length:80
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:Chlorophyll A/B binding protein 12
Chain IDs:O
Chain Length:225
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaD
Chain IDs:P
Chain Length:143
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaE
Chain IDs:Q
Chain Length:66
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaF
Chain IDs:R
Chain Length:154
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaG
Chain IDs:S
Chain Length:97
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaH
Chain IDs:T
Chain Length:88
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaI
Chain IDs:U
Chain Length:30
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaJ
Chain IDs:V
Chain Length:42
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaK
Chain IDs:W
Chain Length:77
Number of Molecules:1
Biological Source:Physcomitrella patens
Polymer Type:polypeptide(L)
Molecule:PsaL
Chain IDs:X
Chain Length:157
Number of Molecules:1
Biological Source:Physcomitrella patens
Ligand Molecules
Primary Citation
A unique supramolecular organization of photosystem I in the moss Physcomitrella patens.
Nat Plants 4 904 909 (2018)
PMID: 30374090 DOI: 10.1038/s41477-018-0271-1

Abstact

The photosynthesis machinery in chloroplast thylakoid membranes is comprised of multiple protein complexes and supercomplexes1,2. Here, we show a novel supramolecular organization of photosystem I (PSI) in the moss Physcomitrella patens by single-particle cryo-electron microscopy. The moss-specific light-harvesting complex (LHC) protein Lhcb9 is involved in this PSI supercomplex, which has been shown to have a molecular density similar to that of the green alga Chlamydomonas reinhardtii3. Our results show that the structural organization is unexpectedly different-two rows of the LHCI belt exist as in C. reinhardtii4, but the outer one is shifted toward the PsaK side. Furthermore, one trimeric LHC protein and one monomeric LHC protein position alongside PsaL/K, filling the gap between these subunits and the outer LHCI belt. We provide evidence showing that Lhcb9 is a key factor, acting as a linkage between the PSI core and the outer LHCI belt to form the unique supramolecular organization of the PSI supercomplex in P. patens.

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Primary Citation of related structures