6MDR image
Entry Detail
PDB ID:
6MDR
EMDB ID:
Title:
Cryo-EM structure of the Ceru+32/GFP-17 protomer
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-09-05
Release Date:
2019-01-23
Method Details:
Experimental Method:
Resolution:
3.47 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ceru+32
Mutations:E7R, T10R, V12K, D20K, E33K, E35K, Y67W, S73A, D77K, E91K, D103K, D118R, E125K, I129R, D134K, E143R, F146G, N147I, H149D, N150K, Q158R, N165K, E173K, D191R, D198R, Q205R, N213K, T231K
Chain IDs:A (auth: a), C (auth: c), E (auth: e), G (auth: g), I (auth: i), K (auth: k), M (auth: m), O (auth: o)
Chain Length:247
Number of Molecules:8
Biological Source:Aequorea victoria
Polymer Type:polypeptide(L)
Description:GFP-17
Mutations:T39D, T44D, R81E, N150E, K157D, Q158E, N165E, V194D, N199E, A228D, H232E
Chain IDs:B (auth: b), D (auth: d), F (auth: f), H (auth: h), J (auth: j), L (auth: l), N (auth: n), P (auth: p)
Chain Length:240
Number of Molecules:8
Biological Source:Aequorea victoria
Ligand Molecules
Primary Citation
Supercharging enables organized assembly of synthetic biomolecules.
Nat Chem 11 204 212 (2019)
PMID: 30643229 DOI: 10.1038/s41557-018-0196-3

Abstact

Symmetrical protein oligomers are ubiquitous in biological systems and perform key structural and regulatory functions. However, there are few methods for constructing such oligomers. Here we have engineered completely synthetic, symmetrical oligomers by combining pairs of oppositely supercharged variants of a normally monomeric model protein through a strategy we term 'supercharged protein assembly' (SuPrA). We show that supercharged variants of green fluorescent protein can assemble into a variety of architectures including a well-defined symmetrical 16-mer structure that we solved using cryo-electron microscopy at 3.47 Å resolution. The 16-mer is composed of two stacked rings of octamers, in which the octamers contain supercharged proteins of alternating charges, and interactions within and between the rings are mediated by a variety of specific electrostatic contacts. The ready assembly of this structure suggests that combining oppositely supercharged pairs of protein variants may provide broad opportunities for generating novel architectures via otherwise unprogrammed interactions.

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Primary Citation of related structures