6MCE image
Deposition Date 2018-08-31
Release Date 2018-10-31
Last Version Date 2024-05-01
Entry Detail
PDB ID:
6MCE
Keywords:
Title:
Solution structure of HIV-1 TAR with Tat RNA Binding Domain
Biological Source:
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
10
Selection Criteria:
structures with acceptable covalent geometry
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:TAR RNA
Chain IDs:A
Chain Length:30
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:Protein Tat
Gene (Uniprot):tat
Chain IDs:B
Chain Length:17
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1 group M subtype B
Ligand Molecules
Primary Citation
HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun 9 4266 4266 (2018)
PMID: 30323330 DOI: 10.1038/s41467-018-06591-6

Abstact

The HIV Tat protein competes with the 7SK:HEXIM interaction to hijack pTEFb from 7SK snRNP and recruit it to the TAR motif on stalled viral transcripts. Here we solve structures of 7SK stemloop-1 and TAR in complex with Tat's RNA binding domain (RBD) to gain insights into this process. We find that 7SK is peppered with arginine sandwich motifs (ASM)-three classical and one with a pseudo configuration. Despite having similar RBDs, the presence of an additional arginine, R52, confers Tat the ability to remodel the pseudo configuration, required for HEXIM binding, into a classical sandwich, thus displacing HEXIM. Tat also uses R52 to remodel the TAR bulge into an ASM whose structure is identical to that of the remodeled ASM in 7SK. Together, our structures reveal a dual structural mimicry wherein viral Tat and TAR have co-opted structural motifs present in cellular HEXIM and 7SK for productive transcription of its genome.

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Primary Citation of related structures