6MB2 image
Deposition Date 2018-08-29
Release Date 2018-09-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6MB2
Keywords:
Title:
Cryo-EM structure of the PYD filament of AIM2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Aequorea victoria (Taxon ID: 6100)
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.00 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Interferon-inducible protein AIM2
Gene (Uniprot):AIM2
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Chain Length:228
Number of Molecules:15
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Green fluorescent protein
Gene (Uniprot):GFP
Chain IDs:P (auth: a), Q (auth: b), R (auth: c), S (auth: d), T (auth: e), U (auth: f), V (auth: g), W (auth: h), X (auth: i), Y (auth: j), Z (auth: k), AA (auth: l), BA (auth: m), CA (auth: n), DA (auth: o)
Chain Length:228
Number of Molecules:15
Biological Source:Aequorea victoria
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CRO P GLY chromophore
MSE P MET modified residue
Ligand Molecules
Primary Citation
Plasticity in PYD assembly revealed by cryo-EM structure of the PYD filament of AIM2.
Cell Discov 1 ? ? (2015)
PMID: 26583071 DOI: 10.1038/celldisc.2015.13

Abstact

Absent in melanoma 2 (AIM2) is an essential cytosolic double-stranded DNA receptor that assembles with the adaptor, apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC), and caspase-1 to form the AIM2 inflammasome, which leads to proteolytic maturation of cytokines and pyroptotic cell death. AIM2 contains an N-terminal Pyrin domain (PYD) that interacts with ASC through PYD/PYD interactions and nucleates ASCPYD filament formation. To elucidate the molecular basis of AIM2-induced ASCPYD polymerization, we generated AIM2PYD filaments fused to green fluorescent protein (GFP) and determined its cryo-electron microscopic (cryo-EM) structure. The map showed distinct definition of helices, allowing fitting of the crystal structure. Surprisingly, the GFP-AIM2PYD filament is a 1-start helix with helical parameters distinct from those of the 3-start ASCPYD filament. However, despite the apparent symmetry difference, helical net and detailed interface analyses reveal minimal changes in subunit packing. GFP-AIM2PYD nucleated ASCPYD filament formation in comparable efficiency as untagged AIM2PYD, suggesting assembly plasticity in both AIM2PYD and ASCPYD. The DNA-binding domain of AIM2 is able to form AIM2/DNA filaments, within which the AIM2PYD is brought into proximity to template ASCPYD filament assembly. Because ASC is able to interact with many PYD-containing receptors for the formation of inflammasomes, the observed structural plasticity may be critically important for this versatility in the PYD/PYD interactions.

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Primary Citation of related structures