6MAR image
Deposition Date 2018-08-28
Release Date 2018-09-26
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6MAR
Title:
HIV-1 Envelope Glycoprotein Clone BG505 delCT N332T in complex with broadly neutralizing antibody Fab PGT151
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Chain IDs:E (auth: A), H (auth: C), I (auth: E)
Chain Length:494
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Chain IDs:F (auth: B), G (auth: D), J (auth: F)
Chain Length:220
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G PGT151 Fab, Heavy chain
Chain IDs:A (auth: M), C (auth: H)
Chain Length:240
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G PGT151, Light chain
Chain IDs:B (auth: N), D (auth: L)
Chain Length:219
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer.
Nat Commun 9 3693 3693 (2018)
PMID: 30209313 DOI: 10.1038/s41467-018-06121-4

Abstact

As the sole target of broadly neutralizing antibodies (bnAbs) to HIV, the envelope glycoprotein (Env) trimer is the focus of vaccination strategies designed to elicit protective bnAbs in humans. Because HIV Env is densely glycosylated with 75-90 N-glycans per trimer, most bnAbs use or accommodate them in their binding epitope, making the glycosylation of recombinant Env a key aspect of HIV vaccine design. Upon analysis of three HIV strains, we here find that site-specific glycosylation of Env from infectious virus closely matches Envs from corresponding recombinant membrane-bound trimers. However, viral Envs differ significantly from recombinant soluble, cleaved (SOSIP) Env trimers, strongly impacting antigenicity. These results provide a benchmark for virus Env glycosylation needed for the design of soluble Env trimers as part of an overall HIV vaccine strategy.

Legend

Protein

Chemical

Disease

Primary Citation of related structures