6M9R image
Entry Detail
PDB ID:
6M9R
Keywords:
Title:
Crystal structure of SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697 with a bound N(delta)-hydroxy-N(omega)-methyl-L-arginine intermediate
Biological Source:
PDB Version:
Deposition Date:
2018-08-24
Release Date:
2019-02-06
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SznF
Chain IDs:A, B
Chain Length:471
Number of Molecules:2
Biological Source:Streptomyces achromogenes subsp. streptozoticus
Primary Citation
An N-nitrosating metalloenzyme constructs the pharmacophore of streptozotocin.
Nature 566 94 99 (2019)
PMID: 30728519 DOI: 10.1038/s41586-019-0894-z

Abstact

Small molecules containing the N-nitroso group, such as the bacterial natural product streptozotocin, are prominent carcinogens1,2 and important cancer chemotherapeutics3,4. Despite the considerable importance of this functional group to human health, enzymes dedicated to the assembly of the N-nitroso unit have not been identified. Here we show that SznF, a metalloenzyme from the biosynthesis of streptozotocin, catalyses an oxidative rearrangement of the guanidine group of Nω-methyl-L-arginine to generate an N-nitrosourea product. Structural characterization and mutagenesis of SznF reveal two separate active sites that promote distinct steps in this transformation using different iron-containing metallocofactors. This biosynthetic reaction, which has little precedent in enzymology or organic synthesis, expands the catalytic capabilities of non-haem-iron-dependent enzymes to include N-N bond formation. We find that biosynthetic gene clusters that encode SznF homologues are widely distributed among bacteria-including environmental organisms, plant symbionts and human pathogens-which suggests an unexpectedly diverse and uncharacterized microbial reservoir of bioactive N-nitroso metabolites.

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