6M94 image
Entry Detail
PDB ID:
6M94
Keywords:
Title:
Monophosphorylated pSer33 b-Catenin peptide bound to b-TrCP/Skp1 Complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-08-22
Release Date:
2019-04-03
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:F-box/WD repeat-containing protein 1A
Chain IDs:A
Chain Length:432
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:S-phase kinase-associated protein 1
Chain IDs:B
Chain Length:144
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Catenin beta-1
Chain IDs:C
Chain Length:33
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP C SER modified residue
Primary Citation
Prospective discovery of small molecule enhancers of an E3 ligase-substrate interaction.
Nat Commun 10 1402 1402 (2019)
PMID: 30926793 DOI: 10.1038/s41467-019-09358-9

Abstact

Protein-protein interactions (PPIs) governing the recognition of substrates by E3 ubiquitin ligases are critical to cellular function. There is significant therapeutic potential in the development of small molecules that modulate these interactions; however, rational design of small molecule enhancers of PPIs remains elusive. Herein, we report the prospective identification and rational design of potent small molecules that enhance the interaction between an oncogenic transcription factor, β-Catenin, and its cognate E3 ligase, SCFβ-TrCP. These enhancers potentiate the ubiquitylation of mutant β-Catenin by β-TrCP in vitro and induce the degradation of an engineered mutant β-Catenin in a cellular system. Distinct from PROTACs, these drug-like small molecules insert into a naturally occurring PPI interface, with contacts optimized for both the substrate and ligase within the same small molecule entity. The prospective discovery of 'molecular glue' presented here provides a paradigm for the development of small molecule degraders targeting hard-to-drug proteins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures