ISDA: 6M6I

Deposition Date 2020-03-14

Release Date 2021-03-10

Last Version Date 2024-11-20

Entry Detail

PDB ID:

6M6I

Keywords:

VIRAL PROTEIN

Title:

Structure of HSV2 B-capsid portal vertex

Biological Source:

Source Organism:

Human herpesvirus 2 (Taxon ID: 10310)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.05 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):MCP
Chain IDs:A, B, C, D, E, F
Chain Length:1374
Number of Molecules:6
Biological Source:Human herpesvirus 2

UniProt ID:P89442 Pfam ID:PF03122

Polymer Type:polypeptide(L)
Molecule:Coiled coils chain 1
Chain IDs:G
Chain Length:81
Number of Molecules:1
Biological Source:Human herpesvirus 2

Polymer Type:polypeptide(L)
Molecule:Coiled coils chain 2
Chain IDs:H
Chain Length:83
Number of Molecules:1
Biological Source:Human herpesvirus 2

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 2
Gene (Uniprot):UL18
Chain IDs:I, J
Chain Length:318
Number of Molecules:2
Biological Source:Human herpesvirus 2

UniProt ID:G9I239 Pfam ID:PF01802

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 1
Chain IDs:K
Chain Length:466
Number of Molecules:1
Biological Source:Human herpesvirus 2

UniProt ID:P22486 Pfam ID:PF03327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small capsomere-interacting protein
Gene (Uniprot):UL35
Chain IDs:L, M, N, O, P, Q
Chain Length:112
Number of Molecules:6
Biological Source:Human herpesvirus 2

UniProt ID:G9I257 Pfam ID:PF04496

Ligand Molecules

Primary Citation

Structures of the portal vertex reveal essential protein-protein interactions for Herpesvirus assembly and maturation.

Wang, N, Chen, W, Zhu, L, Zhu, D, Feng, R, Wang, J, Zhu, B, Zhang, X, Chen, X, Liu, X, Yan, R, Ni, D, Zhou, G.G, Liu, H, Rao, Z, Wang, X.Show

Protein Cell 11 366 373 (2020)

PMID: 32285350 DOI: 10.1007/s13238-020-00711-z

Primary Citation of related structures

Feedback Form