6M6I image
Entry Detail
PDB ID:
6M6I
EMDB ID:
EMD-30125
Keywords:
VIRAL PROTEIN
Title:
Structure of HSV2 B-capsid portal vertex
Biological Source:
Source Organism:
Human herpesvirus 2
PDB Version:
Deposition Date:
2020-03-14
Release Date:
2021-03-10
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.05 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
6M6I validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Major capsid protein
Chain IDs:A, B, C, D, E, F
Chain Length:1374
Number of Molecules:6
Biological Source:Human herpesvirus 2
UniProt ID:P89442 Pfam ID:PF03122
Polymer Type:polypeptide(L)
Description:Coiled coils chain 1
Chain IDs:G
Chain Length:81
Number of Molecules:1
Biological Source:Human herpesvirus 2
Polymer Type:polypeptide(L)
Description:Coiled coils chain 2
Chain IDs:H
Chain Length:83
Number of Molecules:1
Biological Source:Human herpesvirus 2
Protein Blast
Polymer Type:polypeptide(L)
Description:Triplex capsid protein 2
Chain IDs:I, J
Chain Length:318
Number of Molecules:2
Biological Source:Human herpesvirus 2
UniProt ID:G9I239 Pfam ID:PF01802
Protein Blast
Polymer Type:polypeptide(L)
Description:Triplex capsid protein 1
Chain IDs:K
Chain Length:466
Number of Molecules:1
Biological Source:Human herpesvirus 2
UniProt ID:P22486 Pfam ID:PF03327
Protein Blast
Polymer Type:polypeptide(L)
Description:Small capsomere-interacting protein
Chain IDs:L, M, N, O, P, Q
Chain Length:112
Number of Molecules:6
Biological Source:Human herpesvirus 2
UniProt ID:G9I257 Pfam ID:PF04496
Ligand Molecules
NA
Primary Citation
Structures of the portal vertex reveal essential protein-protein interactions for Herpesvirus assembly and maturation.
Protein Cell 11 366 373 (2020)
PMID: 32285350 DOI: 10.1007/s13238-020-00711-z
Primary Citation of related structures
6M6I