ISDA

Entry Detail

PDB ID:

6M6H

EMDB ID:

EMD-30124

Keywords:

VIRAL PROTEIN

Title:

Structure of HSV2 C-capsid portal vertex

Biological Source:

Source Organism:

Human herpesvirus 2

PDB Version:

Deposition Date:

2020-03-14

Release Date:

2021-03-24

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.50 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Major capsid protein
Chain IDs:A, B, C, D, E, F
Chain Length:1374
Number of Molecules:6
Biological Source:Human herpesvirus 2

UniProt ID:P89442 Pfam ID:PF03122

Protein Blast

Polymer Type:polypeptide(L)
Description:Capsid vertex component 1
Chain IDs:G
Chain Length:702
Number of Molecules:1
Biological Source:Human herpesvirus 2

UniProt ID:P89440 Pfam ID:PF04559

Protein Blast

Polymer Type:polypeptide(L)
Description:Capsid vertex component 2
Chain IDs:H, I
Chain Length:585
Number of Molecules:2
Biological Source:Human herpesvirus 2

UniProt ID:P89448 Pfam ID:PF01499

Protein Blast

Polymer Type:polypeptide(L)
Description:Small capsomere-interacting protein
Chain IDs:J, K, L, M, N, O
Chain Length:112
Number of Molecules:6
Biological Source:Human herpesvirus 2

UniProt ID:P89458 Pfam ID:PF04496

Protein Blast

Polymer Type:polypeptide(L)
Description:Large tegument protein deneddylase
Chain IDs:P, Q
Chain Length:3122
Number of Molecules:2
Biological Source:Human herpesvirus 2

UniProt ID:P89459 Pfam ID:PF04843, PF03586

Protein Blast

Polymer Type:polypeptide(L)
Description:Triplex capsid protein 2
Chain IDs:R, S
Chain Length:318
Number of Molecules:2
Biological Source:Human herpesvirus 2

UniProt ID:P89441 Pfam ID:PF01802

Protein Blast

Polymer Type:polypeptide(L)
Description:Triplex capsid protein 1
Chain IDs:T
Chain Length:466
Number of Molecules:1
Biological Source:Human herpesvirus 2

UniProt ID:P22486 Pfam ID:PF03327

Ligand Molecules

Primary Citation

Structures of the portal vertex reveal essential protein-protein interactions for Herpesvirus assembly and maturation.

Wang, N, Chen, W, Zhu, L, Zhu, D, Feng, R, Wang, J, Zhu, B, Zhang, X, Chen, X, Liu, X, Yan, R, Ni, D, Zhou, G.G, Liu, H, Rao, Z, Wang, X.Show

Protein Cell 11 366 373 (2020)

PMID: 32285350 DOI: 10.1007/s13238-020-00711-z

Primary Citation of related structures