6M6G image
Entry Detail
PDB ID:
6M6G
EMDB ID:
EMD-30123
Keywords:
VIRAL PROTEIN
Title:
Structure of HSV2 viron capsid portal vertex
Biological Source:
Source Organism:
Human herpesvirus 2
PDB Version:
Deposition Date:
2020-03-14
Release Date:
2021-03-24
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
5.39 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
6M6G validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Major capsid protein
Chain IDs:A (auth: B), B (auth: C), C (auth: D), D (auth: E), E (auth: F), G (auth: I)
Chain Length:1374
Number of Molecules:6
Biological Source:Human herpesvirus 2
UniProt ID:P89442 Pfam ID:PF03122
Protein Blast
Polymer Type:polypeptide(L)
Description:Small capsomere-interacting protein
Chain IDs:F (auth: G), J (auth: M), M (auth: Q), O (auth: T), P (auth: U), Q (auth: V)
Chain Length:112
Number of Molecules:6
Biological Source:Human herpesvirus 2
UniProt ID:P89458 Pfam ID:PF04496
Protein Blast
Polymer Type:polypeptide(L)
Description:Triplex capsid protein 2
Chain IDs:H (auth: K), K (auth: O)
Chain Length:318
Number of Molecules:2
Biological Source:Human herpesvirus 2
UniProt ID:P89441 Pfam ID:PF01802
Polymer Type:polypeptide(L)
Description:coiled coils
Chain IDs:I (auth: L)
Chain Length:585
Number of Molecules:1
Biological Source:Human herpesvirus 2
Polymer Type:polypeptide(L)
Description:Coiled coils
Chain IDs:L (auth: P)
Chain Length:87
Number of Molecules:1
Biological Source:Human herpesvirus 2
Protein Blast
Polymer Type:polypeptide(L)
Description:Triplex capsid protein 1
Chain IDs:N (auth: S)
Chain Length:466
Number of Molecules:1
Biological Source:Human herpesvirus 2
UniProt ID:P22486 Pfam ID:PF03327
Protein Blast
Polymer Type:polypeptide(L)
Description:Capsid vertex component 1
Chain IDs:R (auth: k)
Chain Length:318
Number of Molecules:1
Biological Source:Human herpesvirus 2
UniProt ID:P89440 Pfam ID:PF04559
Protein Blast
Polymer Type:polypeptide(L)
Description:Capsid vertex component 2
Chain IDs:S (auth: l), T (auth: m)
Chain Length:585
Number of Molecules:2
Biological Source:Human herpesvirus 2
UniProt ID:P89448 Pfam ID:PF01499
Protein Blast
Polymer Type:polypeptide(L)
Description:Large tegument protein deneddylase
Chain IDs:U (auth: n), V (auth: o)
Chain Length:3122
Number of Molecules:2
Biological Source:Human herpesvirus 2
UniProt ID:P89459 Pfam ID:PF04843, PF03586
Ligand Molecules
NA
Primary Citation
Structures of the portal vertex reveal essential protein-protein interactions for Herpesvirus assembly and maturation.
Protein Cell 11 366 373 (2020)
PMID: 32285350 DOI: 10.1007/s13238-020-00711-z
Primary Citation of related structures
6M6G