ISDA: 6M6G

Deposition Date 2020-03-14

Release Date 2021-03-24

Last Version Date 2024-11-20

Entry Detail

PDB ID:

6M6G

Keywords:

VIRAL PROTEIN

Title:

Structure of HSV2 viron capsid portal vertex

Biological Source:

Source Organism:

Human herpesvirus 2 (Taxon ID: 10310)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

5.39 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):MCP
Chain IDs:A (auth: B), B (auth: C), C (auth: D), D (auth: E), E (auth: F), G (auth: I)
Chain Length:1374
Number of Molecules:6
Biological Source:Human herpesvirus 2

UniProt ID:P89442 Pfam ID:PF03122

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small capsomere-interacting protein
Chain IDs:F (auth: G), J (auth: M), M (auth: Q), O (auth: T), P (auth: U), Q (auth: V)
Chain Length:112
Number of Molecules:6
Biological Source:Human herpesvirus 2

UniProt ID:P89458 Pfam ID:PF04496

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 2
Chain IDs:H (auth: K), K (auth: O)
Chain Length:318
Number of Molecules:2
Biological Source:Human herpesvirus 2

UniProt ID:P89441 Pfam ID:PF01802

Polymer Type:polypeptide(L)
Molecule:coiled coils
Chain IDs:I (auth: L)
Chain Length:585
Number of Molecules:1
Biological Source:Human herpesvirus 2

Polymer Type:polypeptide(L)
Molecule:Coiled coils
Chain IDs:L (auth: P)
Chain Length:87
Number of Molecules:1
Biological Source:Human herpesvirus 2

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 1
Chain IDs:N (auth: S)
Chain Length:466
Number of Molecules:1
Biological Source:Human herpesvirus 2

UniProt ID:P22486 Pfam ID:PF03327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Capsid vertex component 1
Gene (Uniprot):CVC1
Chain IDs:R (auth: k)
Chain Length:318
Number of Molecules:1
Biological Source:Human herpesvirus 2

UniProt ID:P89440 Pfam ID:PF04559

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Capsid vertex component 2
Gene (Uniprot):CVC2
Chain IDs:S (auth: l), T (auth: m)
Chain Length:585
Number of Molecules:2
Biological Source:Human herpesvirus 2

UniProt ID:P89448 Pfam ID:PF01499

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large tegument protein deneddylase
Gene (Uniprot):UL36
Chain IDs:U (auth: n), V (auth: o)
Chain Length:3122
Number of Molecules:2
Biological Source:Human herpesvirus 2

UniProt ID:P89459 Pfam ID:PF04843, PF03586

Ligand Molecules

Primary Citation

Structures of the portal vertex reveal essential protein-protein interactions for Herpesvirus assembly and maturation.

Wang, N, Chen, W, Zhu, L, Zhu, D, Feng, R, Wang, J, Zhu, B, Zhang, X, Chen, X, Liu, X, Yan, R, Ni, D, Zhou, G.G, Liu, H, Rao, Z, Wang, X.Show

Protein Cell 11 366 373 (2020)

PMID: 32285350 DOI: 10.1007/s13238-020-00711-z

Primary Citation of related structures

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