6M2W image
Entry Detail
PDB ID:
6M2W
EMDB ID:
Title:
Structure of RyR1 (Ca2+/Caffeine/ATP/CaM1234/CHL)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-03-01
Release Date:
2020-09-02
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1
Chain IDs:A, D, G, J
Chain Length:5037
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Peptidyl-prolyl cis-trans isomerase FKBP1B
Chain IDs:B, E, H, K
Chain Length:107
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Calmodulin-1
Mutations:E32A, E68A, E105A, E141A
Chain IDs:C, F, I, L
Chain Length:149
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural basis for diamide modulation of ryanodine receptor.
Nat.Chem.Biol. 16 1246 1254 (2020)
PMID: 32807966 DOI: 10.1038/s41589-020-0627-5

Abstact

The diamide insecticide class is one of the top-selling insecticides globally. They are used to control a wide range of pests by targeting their ryanodine receptors (RyRs). Here, we report the highest-resolution cryo-electron microscopy (cryo-EM) structure of RyR1 in the open state, in complex with the anthranilic diamide chlorantraniliprole (CHL). The 3.2-Å local resolution map facilitates unambiguous assignment of the CHL binding site. The molecule induces a conformational change by affecting the S4-S5 linker, triggering channel opening. The binding site is further corroborated by mutagenesis data, which reveal how diamide insecticides are selective to the Lepidoptera group of insects over honeybee or mammalian RyRs. Our data reveal that several pests have developed resistance via two mechanisms, steric hindrance and loss of contact. Our results provide a foundation for the development of highly selective pesticides aimed at overcoming resistance and therapeutic molecules to treat human myopathies.

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