6M2M image
Deposition Date 2020-02-28
Release Date 2020-10-21
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6M2M
Keywords:
Title:
A role for histone chaperone OsChz1 in histone recognition and deposition
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histone H2B.1
Gene (Uniprot):F24B9.10
Chain IDs:D, H (auth: F), I (auth: J), J (auth: H), K (auth: L), L (auth: B)
Chain Length:98
Number of Molecules:6
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Molecule:Probable histone H2A.3
Gene (Uniprot):M4I22.40
Chain IDs:A (auth: E), B (auth: A), C, E (auth: G), F (auth: I), G (auth: K)
Chain Length:93
Number of Molecules:6
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Molecule:Expressed protein
Gene (Uniprot):OSNPB_110544600
Chain IDs:M, N, O
Chain Length:105
Number of Molecules:3
Biological Source:Oryza sativa subsp. japonica
Ligand Molecules
Primary Citation
OsChz1 acts as a histone chaperone in modulating chromatin organization and genome function in rice.
Nat Commun 11 5717 5717 (2020)
PMID: 33177521 DOI: 10.1038/s41467-020-19586-z

Abstact

While the yeast Chz1 acts as a specific histone-chaperone for H2A.Z, functions of CHZ-domain proteins in multicellular eukaryotes remain obscure. Here, we report on the functional characterization of OsChz1, a sole CHZ-domain protein identified in rice. OsChz1 interacts with both the canonical H2A-H2B dimer and the variant H2A.Z-H2B dimer. Within crystal structure the C-terminal region of OsChz1 binds H2A-H2B via an acidic region, pointing to a previously unknown recognition mechanism. Knockout of OsChz1 leads to multiple plant developmental defects. At genome-wide level, loss of OsChz1 causes mis-regulations of thousands of genes and broad alterations of nucleosome occupancy as well as reductions of H2A.Z-enrichment. While OsChz1 associates with chromatin regions enriched of repressive histone marks (H3K27me3 and H3K4me2), its loss does not affect the genome landscape of DNA methylation. Taken together, it is emerging that OsChz1 functions as an important H2A/H2A.Z-H2B chaperone in dynamic regulation of chromatin for higher eukaryote development.

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Primary Citation of related structures