ISDA

Deposition Date 2020-02-22

Release Date 2020-09-09

Last Version Date 2023-11-29

Entry Detail

PDB ID:

6M0V

Keywords:

HYDROLASE/DNA/RNA

Title:

Crsytal structure of streptococcus thermophilus Cas9 in complex with the GGAA PAM

Biological Source:

Source Organism:

Streptococcus thermophilus LMD-9 (Taxon ID: 322159)
Streptococcus thermophilus (Taxon ID: 1308)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.00 Å

R-Value Free:

0.25

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

C 1 2 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CRISPR-associated endonuclease Cas9 1
Gene (Uniprot):cas9-1
Mutations:H599A
Chain IDs:D (auth: A)
Chain Length:1122
Number of Molecules:1
Biological Source:Streptococcus thermophilus LMD-9

UniProt ID:Q03LF7 Pfam ID:PF18470, PF13395, PF18541, PF18061, PF18070

Polymer Type:polyribonucleotide
Molecule:RNA (71-MER)
Chain IDs:A (auth: B)
Chain Length:71
Number of Molecules:1
Biological Source:Streptococcus thermophilus

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (28-MER)
Chain IDs:B (auth: C)
Chain Length:28
Number of Molecules:1
Biological Source:Streptococcus thermophilus

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*AP*GP*GP*AP*AP*GP*C)-3')
Chain IDs:C (auth: D)
Chain Length:8
Number of Molecules:1
Biological Source:Streptococcus thermophilus

Ligand Molecules

Primary Citation

Catalytic-state structure and engineering of Streptococcus thermophilus Cas9

Zhang, Y, Zhang, H, Xu, X, Wang, Y, Chen, W, Wang, Y, Wu, Z, Tang, N, Wang, Y, Zhao, S, Gan, J, Ji, Q.Show

Nat Catal ? ? ? (2020)

DOI: 10.1038/s41929-020-00506-9

Primary Citation of related structures