6M0Q image
Deposition Date 2020-02-22
Release Date 2021-03-10
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6M0Q
Keywords:
Title:
Hydroxylamine oxidoreductase from Nitrosomonas europaea
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Aerobic hydroxylamine oxidoreductase
Chain IDs:A, C, E, G, I, K
Chain Length:570
Number of Molecules:6
Biological Source:Nitrosomonas europaea
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein
Chain IDs:B, D, F, H, J, L
Chain Length:91
Number of Molecules:6
Biological Source:Nitrosomonas europaea
Primary Citation
Juglone, a plant-derived 1,4-naphthoquinone, binds to hydroxylamine oxidoreductase and inhibits the electron transfer to cytochrome c 554.
Appl.Environ.Microbiol. 89 e0129123 e0129123 (2023)
PMID: 38009977 DOI: 10.1128/aem.01291-23

Abstact

Nitrification, the microbial conversion of ammonia to nitrate via nitrite, plays a pivotal role in the global nitrogen cycle. However, the excessive use of ammonium-based fertilizers in agriculture has disrupted this cycle, leading to groundwater pollution and greenhouse gas emissions. In this study, we have demonstrated the inhibitory effects of plant-derived juglone and related 1,4-naphthoquinones on the nitrification process in Nitrosomonas europaea. Notably, the inhibition mechanism is elucidated in which 1,4-naphthoquinones interact with hydroxylamine oxidoreductase, disrupting the electron transfer to cytochrome c554, a physiological electron acceptor. These findings support the notion that phytochemicals can impede nitrification by interfering with the essential electron transfer process in ammonia oxidation. The findings presented in this article offer valuable insights for the development of strategies aimed at the management of nitrification, reduction of fertilizer utilization, and mitigation of greenhouse gas emissions.

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