6LZ2 image
Deposition Date 2020-02-17
Release Date 2020-12-23
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6LZ2
Title:
Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb44)
Biological Source:
Source Organism:
Galaxea fascicularis (Taxon ID: 46745)
Lama glama (Taxon ID: 9844)
Method Details:
Experimental Method:
Resolution:
2.03 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thermostable green fluorescent protein
Chain IDs:A, C
Chain Length:234
Number of Molecules:2
Biological Source:Galaxea fascicularis
Polymer Type:polypeptide(L)
Molecule:synthetic nanobody (sybody) 44 against the thermostable green fluorescent protein (TGP)
Chain IDs:B, D
Chain Length:144
Number of Molecules:2
Biological Source:Lama glama
Primary Citation
An improved fluorescent tag and its nanobodies for membrane protein expression, stability assay, and purification.
Commun Biol 3 753 753 (2020)
PMID: 33303987 DOI: 10.1038/s42003-020-01478-z

Abstact

Green fluorescent proteins (GFPs) are widely used to monitor membrane protein expression, purification, and stability. An ideal reporter should be stable itself and provide high sensitivity and yield. Here, we demonstrate that a coral (Galaxea fascicularis) thermostable GFP (TGP) is by such reasons an improved tag compared to the conventional jellyfish GFPs. TGP faithfully reports membrane protein stability at temperatures near 90 °C (20-min heating). By contrast, the limit for the two popular GFPs is 64 °C and 74 °C. Replacing GFPs with TGP increases yield for all four test membrane proteins in four expression systems. To establish TGP as an affinity tag for membrane protein purification, several high-affinity synthetic nanobodies (sybodies), including a non-competing pair, are generated, and the crystal structure of one complex is solved. Given these advantages, we anticipate that TGP becomes a widely used tool for membrane protein structural studies.

Legend

Protein

Chemical

Disease

Primary Citation of related structures