6LZ1 image
Entry Detail
PDB ID:
6LZ1
EMDB ID:
Keywords:
Title:
Structure of S.pombe alpha-mannosidase Ams1
Biological Source:
PDB Version:
Deposition Date:
2020-02-17
Release Date:
2020-09-09
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ams1
Chain IDs:A, B, C, D
Chain Length:1133
Number of Molecules:4
Biological Source:Schizosaccharomyces pombe 972h-
Ligand Molecules
Primary Citation
Cryo-EM structure of fission yeast tetrameric alpha-mannosidase Ams1.
Febs Open Bio 10 2437 2451 (2020)
PMID: 32981237 DOI: 10.1002/2211-5463.12988

Abstact

Fungal α-mannosidase Ams1 and its mammalian homolog MAN2C1 hydrolyze terminal α-linked mannoses in free oligosaccharides released from misfolded glycoproteins or lipid-linked oligosaccharide donors. Ams1 is transported by selective autophagy into vacuoles. Here, we determine the tetrameric structure of Ams1 from the fission yeast Schizosaccharomyces pombe at 3.2 Å resolution by cryo-electron microscopy. Distinct from a low resolution structure of S. cerevisiae Ams1, S. pombe Ams1 has a prominent N-terminal tail that mediates tetramerization and an extra β-sheet domain. Ams1 shares a conserved active site with other enzymes in glycoside hydrolase family 38, to which Ams1 belongs, but contains extra N-terminal domains involved in tetramerization. The atomic structure of Ams1 reported here will aid understanding of its enzymatic activity and transport mechanism.

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