6LT4 image
Deposition Date 2020-01-21
Release Date 2021-01-27
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6LT4
Keywords:
Title:
AAA+ ATPase, ClpL from Streptococcus pneumoniae: ATPrS-bound
Biological Source:
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP-dependent Clp protease, ATP-binding subunit
Gene (Uniprot):clpL
Mutagens:E193A/E526A
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N
Chain Length:701
Number of Molecules:14
Biological Source:Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Primary Citation
ClpL is a functionally active tetradecameric AAA+ chaperone, distinct from hexameric/dodecameric ones.
Faseb J. 34 14353 14370 (2020)
PMID: 32910525 DOI: 10.1096/fj.202000843R

Abstact

AAA+ (ATPases associated with diverse cellular activities) chaperones are involved in a plethora of cellular activities to ensure protein homeostasis. The function of AAA+ chaperones is mostly modulated by their hexameric/dodecameric quaternary structures. Here we report the structural and biochemical characterizations of a tetradecameric AAA+ chaperone, ClpL from Streptococcus pneumoniae. ClpL exists as a tetradecamer in solution in the presence of ATP. The cryo-EM structure of ClpL at 4.5 Å resolution reveals a striking tetradecameric arrangement. Solution structures of ClpL derived from small-angle X-ray scattering data suggest that the tetradecameric ClpL could assume a spiral conformation found in active hexameric/dodecameric AAA+ chaperone structures. Vertical positioning of the middle domain accounts for the head-to-head arrangement of two heptameric rings. Biochemical activity assays with site-directed mutagenesis confirmed the critical roles of residues both in the integrity of the tetradecameric arrangement and activities of ClpL. Non-conserved Q321 and R670 are crucial in the heptameric ring assembly of ClpL. These results establish that ClpL is a functionally active tetradecamer, clearly distinct from hexameric/dodecameric AAA+ chaperones.

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