6LSA image
Deposition Date 2020-01-17
Release Date 2020-06-17
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6LSA
Keywords:
Title:
Complex structure of bovine herpesvirus 1 glycoprotein D and bovine nectin-1 IgV
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nectin cell adhesion molecule 1
Gene (Uniprot):NECTIN1
Chain IDs:A, C (auth: B)
Chain Length:109
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein D
Gene (Uniprot):US6
Chain IDs:B (auth: F), D (auth: C)
Chain Length:311
Number of Molecules:2
Biological Source:Bovine alphaherpesvirus 1
Ligand Molecules
Primary Citation
Crystal structure of bovine herpesvirus 1 glycoprotein D bound to nectin-1 reveals the basis for its low-affinity binding to the receptor.
Sci Adv 6 eaba5147 eaba5147 (2020)
PMID: 32426511 DOI: 10.1126/sciadv.aba5147

Abstact

Bovine herpesvirus 1 (BHV-1) has received increasing attention for its potential oncolytic applications. BHV-1 recognizes nectin-1 for cell entry via viral glycoprotein D (gD) but represents a low-affinity nectin-1 binding virus. The molecular basis underlying this low receptor-binding affinity, however, remains unknown. Here, the crystal structures of BHV-1 gD in the free and nectin-1-bound forms are presented. While showing an overall resembled nectin-1 binding mode to other alphaherpesvirus gDs, BHV-1 gD has a unique G-strand/α2-helix interloop that disturbs gD/nectin-1 interactions. Residue R188 residing in this loop is observed to otherwise cause strong steric hindrance with the bound receptor, making a large conformational change of the loop a prerequisite for nectin-1 engagement. Subsequently, substitution of R188 with glycine markedly enhances the affinity of the BHV-1-gD/nectin-1 interaction (by about fivefold). These structural and functional data delineate the receptor-recognition basis for BHV-1, which might facilitate BHV-1-based oncolytic design in the future.

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