6LRY image
Entry Detail
PDB ID:
6LRY
Title:
Crystal structure of human endothelin ETB receptor in complex with sarafotoxin S6b
Biological Source:
PDB Version:
Deposition Date:
2020-01-16
Release Date:
2020-02-12
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Endothelin receptor type B,Endolysin,Endothelin receptor type B
Mutations:R124Y,D154A,K270A,C1052T,C1095A,S342A,I381A,C396A,C400A,C405A
Chain IDs:A
Chain Length:504
Number of Molecules:1
Biological Source:Homo sapiens, Enterobacteria phage RB59
Polymer Type:polypeptide(L)
Description:Sarafotoxin-B
Chain IDs:B
Chain Length:21
Number of Molecules:1
Biological Source:Atractaspis engaddensis
Ligand Molecules
Primary Citation
Crystal structure of human endothelin ETBreceptor in complex with sarafotoxin S6b.
Biochem.Biophys.Res.Commun. 528 383 388 (2020)
PMID: 32001000 DOI: 10.1016/j.bbrc.2019.12.091

Abstact

Sarafotoxins (SRTXs) are endothelin-like peptides extracted from snake venom. SRTXs stimulate the endothelin ETA and ETB receptors and enhance vasoconstriction, followed by left ventricular dysfunction and bronchoconstriction. SRTXs include four major isopeptides, S6a-d, with different subtype selectivities. Here, we report the crystal structure of the human ETB receptor in complex with the non-selective sarafotoxin S6b at 3.0 Å resolution. This structure reveals the similarities and differences between the binding modes of the endothelins and S6b. Moreover, molecular dynamics simulations based on the S6b-bound receptor provides structural insight into the subtype selectivity of the sarafotoxins. Our study clarifies the recognition mechanism of the endothelin-like peptide families.

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Primary Citation of related structures