6LN2 image
Deposition Date 2019-12-28
Release Date 2020-03-18
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6LN2
Title:
Crystal structure of full length human GLP1 receptor in complex with Fab fragment (Fab7F38)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glucagon-like peptide 1 receptor,Rubredoxin,Glucagon-like peptide 1 receptor
Gene (Uniprot):GLP1R
Mutations:S193C,I196F,S225A,M233C,S271A,I317C,G318I,K346A,C347F,G361C,E387D
Chain IDs:A
Chain Length:469
Number of Molecules:1
Biological Source:Homo sapiens, Clostridium pasteurianum
Polymer Type:polypeptide(L)
Molecule:Fab7F38_light chain
Chain IDs:B
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab7F38_heavy chain
Chain IDs:C
Chain Length:226
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Full-length human GLP-1 receptor structure without orthosteric ligands.
Nat Commun 11 1272 1272 (2020)
PMID: 32152292 DOI: 10.1038/s41467-020-14934-5

Abstact

Glucagon-like peptide-1 receptor (GLP-1R) is a class B G protein-coupled receptor that plays an important role in glucose homeostasis and treatment of type 2 diabetes. Structures of full-length class B receptors were determined in complex with their orthosteric agonist peptides, however, little is known about their extracellular domain (ECD) conformations in the absence of orthosteric ligands, which has limited our understanding of their activation mechanism. Here, we report the 3.2 Å resolution, peptide-free crystal structure of the full-length human GLP-1R in an inactive state, which reveals a unique closed conformation of the ECD. Disulfide cross-linking validates the physiological relevance of the closed conformation, while electron microscopy (EM) and molecular dynamic (MD) simulations suggest a large degree of conformational dynamics of ECD that is necessary for binding GLP-1. Our inactive structure represents a snapshot of the peptide-free GLP-1R and provides insights into the activation pathway of this receptor family.

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