6LKS image
Deposition Date 2019-12-20
Release Date 2020-10-21
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6LKS
Keywords:
Title:
Effects of zinc ion on oligomerization and pH stability of influenza virus hemagglutinin
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.24 Å
R-Value Free:
0.29
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 chain
Gene (Uniprot):HA
Chain IDs:A (auth: K), C (auth: A), E (auth: C), G (auth: E), I (auth: G), K (auth: I)
Chain Length:330
Number of Molecules:6
Biological Source:Influenza A virus (A/Thailand/CU44/2006(H1N1))
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Gene (Uniprot):HA
Chain IDs:B (auth: L), D (auth: B), F (auth: D), H (auth: F), J (auth: H), L (auth: J)
Chain Length:183
Number of Molecules:6
Biological Source:Influenza A virus (A/Thailand/CU44/2006(H1N1))
Primary Citation
Divalent cation-induced conformational changes of influenza virus hemagglutinin.
Sci Rep 10 15457 15457 (2020)
PMID: 32963316 DOI: 10.1038/s41598-020-72368-x

Abstact

Divalent cations Cu2+ and Zn2+ can prevent the viral growth in mammalian cells during influenza infection, and viral titers decrease significantly on a copper surface. The underlying mechanisms include DNA damage by radicals, modulation of viral protease, M1 or neuraminidase, and morphological changes in viral particles. However, the molecular mechanisms underlying divalent cation-mediated antiviral activities are unclear. An unexpected observation of this study was that a Zn2+ ion is bound by Glu68 and His137 residues at the head regions of two neighboring trimers in the crystal structure of hemagglutinin (HA) derived from A/Thailand/CU44/2006. The binding of Zn2+ at high concentrations induced multimerization of HA and decreased its acid stability. The acid-induced conformational change of HA occurred even at neutral pH in the presence of Zn2+. The fusion of viral and host endosomal membranes requires substantial conformational changes in HA upon exposure to acidic pH. Therefore, our results suggest that binding of Zn2+ may facilitate the conformational changes of HA, analogous to that induced by acidic pH.

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