6LIP image
Deposition Date 2019-12-12
Release Date 2020-12-16
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6LIP
Keywords:
Title:
Crystal structure of NDM-1 in complex with D-captopril derivative wss0218
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
0.98 Å
R-Value Free:
0.14
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Metallo-beta-lactamase type 2
Gene (Uniprot):blaNDM-1
Chain IDs:A
Chain Length:242
Number of Molecules:1
Biological Source:Klebsiella pneumoniae
Primary Citation
Structure-guided optimization of D-captopril for discovery of potent NDM-1 inhibitors.
Bioorg.Med.Chem. 29 115902 115902 (2020)
PMID: 33302045 DOI: 10.1016/j.bmc.2020.115902

Abstact

β-lactam antibiotics have long been the mainstay for the treatment of bacterial infections. New Delhi metallo-β-lactamase 1 (NDM-1) is able to hydrolyze nearly all β-lactam antibiotics and even clinically used serine-β-lactamase inhibitors. The wide and rapid spreading of NDM-1 gene among pathogenic bacteria has attracted extensive attention, therefore high potency NDM-1 inhibitors are urgently needed. Here we report a series of structure-guided design of D-captopril derivatives that can inhibit the activity of NDM-1 in vitro and at cellular levels. Structural comparison indicates the mechanisms of inhibition enhancement and provides insights for further inhibitor optimization.

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Chemical

Disease

Primary Citation of related structures
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