6LHR image
Deposition Date 2019-12-09
Release Date 2021-01-20
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6LHR
Keywords:
Title:
Crystal structure of the complex between Vesicle Amine Transport-1 and NADP
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.62 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Synaptic vesicle membrane protein VAT-1 homolog
Gene (Uniprot):VAT1
Chain IDs:A, B, C, D
Chain Length:353
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural insights into vesicle amine transport-1 (VAT-1) as a member of the NADPH-dependent quinone oxidoreductase family.
Sci Rep 11 2120 2120 (2021)
PMID: 33483563 DOI: 10.1038/s41598-021-81409-y

Abstact

Vesicle amine transport protein-1 (VAT-1) has been implicated in the regulation of vesicular transport, mitochondrial fusion, phospholipid transport and cell migration, and is a potential target of anticancer drugs. Little is known about the molecular function of VAT-1. The amino acid sequence indicates that VAT-1 belongs to the quinone oxidoreductase subfamily, suggesting that VAT-1 may possess enzymatic activity in unknown redox processes. To clarify the molecular function of VAT-1, we determined the three-dimensional structure of human VAT-1 in the free state at 2.3 Å resolution and found that VAT-1 forms a dimer with the conserved NADPH-binding cleft on each protomer. We also determined the structure of VAT-1 in the NADP-bound state at 2.6 Å resolution and found that NADP binds the binding cleft to create a putative active site with the nicotine ring. Substrate screening suggested that VAT-1 possesses oxidoreductase activity against quinones such as 1,2-naphthoquinone and 9,10-phenanthrenequinone.

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