6LH4 image
Deposition Date 2019-12-06
Release Date 2020-12-09
Last Version Date 2023-11-29
Entry Detail
PDB ID:
6LH4
Keywords:
Title:
Crystal structural of MacroD1-ADPr complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ADP-ribose glycohydrolase MACROD1
Gene (Uniprot):MACROD1
Chain IDs:A, B, C, D
Chain Length:235
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular basis for the MacroD1-mediated hydrolysis of ADP-ribosylation.
DNA Repair (Amst) 94 102899 102899 (2020)
PMID: 32683309 DOI: 10.1016/j.dnarep.2020.102899

Abstact

MacroD1 is an enzyme that hydrolyzes protein mono-ADP-ribosylation. However, the key catalytic residues of MacroD1 in these biochemical reactions remain elusive. Here, we present the crystal structure of MacroD1 in a complex with ADP-ribose (ADPR). The β5-α10-loop functions as a switch loop to mediate substrate recognition and right orientation. The conserved Phe272 in the β5-α10-loop plays a crucial role in the orientation of ADPR distal ribose, and a conserved hydrogen-bond network contributes significantly to hold and orient the catalytic water12, which mediates ADPR hydrolysis. Moreover, we found that MacroD1 was recruited to the sites of DNA damage via recognition of ADP-ribosylation at DNA lesions. The MacroD1-mediated ADPR hydrolysis is essential for DNA damage repair. Taken together, our study provides structural and functional insights into the molecular mechanism of MacroD1-mediated ADPR hydrolysis and its role in DNA damage repair.

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Primary Citation of related structures