6LGW image
Deposition Date 2019-12-06
Release Date 2020-02-19
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6LGW
Keywords:
Title:
Structure of Rabies virus glycoprotein in complex with neutralizing antibody 523-11 at acidic pH
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Lyssavirus rabies (Taxon ID: 11292)
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:scFv 523-11
Chain IDs:A, C
Chain Length:228
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycoprotein
Chain IDs:B (auth: E), D (auth: F)
Chain Length:409
Number of Molecules:2
Biological Source:Lyssavirus rabies
Ligand Molecules
Primary Citation
Structural Analysis of Rabies Virus Glycoprotein Reveals pH-Dependent Conformational Changes and Interactions with a Neutralizing Antibody.
Cell Host Microbe 27 441 ? (2020)
PMID: 32004500 DOI: 10.1016/j.chom.2019.12.012

Abstact

Rabies virus (RABV), the etiological agent for the lethal disease of rabies, is a deadly zoonotic pathogen. The RABV glycoprotein (RABV-G) is a key factor mediating virus entry and the major target of neutralizing antibodies. Here, we report the crystal structures of RABV-G solved in the free form at ∼pH-8.0 and in the complex form with a neutralizing antibody 523-11 at ∼pH-6.5, respectively. RABV-G has three domains, and the basic-to-acidic pH change results in large domain re-orientations and concomitant domain-linker re-constructions, switching it from a bent hairpin conformation into an extended conformation. During such low-pH-induced structural transitions, residues located in the domain-linker are found to play important roles in glycoprotein-mediated membrane fusion. Finally, the antibody interacts with RABV-G mainly through its heavy chain and binds to a bipartite conformational epitope in the viral protein for neutralization. These structures provide valuable information for vaccine and drug design.

Legend

Protein

Chemical

Disease

Primary Citation of related structures