6LGN image
Deposition Date 2019-12-05
Release Date 2020-07-29
Last Version Date 2024-05-29
Entry Detail
PDB ID:
6LGN
Keywords:
Title:
The atomic structure of varicella zoster virus C-capsid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
5.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):ORF40
Chain IDs:A, C (auth: M), E (auth: N), G (auth: O), I (auth: P), K (auth: Q), M (auth: R), O (auth: S), Q (auth: T), S (auth: U), U (auth: B), W (auth: C), Y (auth: E), AA (auth: F), CA (auth: G), TA (auth: z)
Chain Length:1396
Number of Molecules:16
Biological Source:Human herpesvirus 3
Polymer Type:polypeptide(L)
Molecule:Small capsomere-interacting protein
Gene (Uniprot):ORF23
Chain IDs:B (auth: D), D (auth: V), F (auth: W), H (auth: X), J (auth: Y), L (auth: Z), N (auth: a), P (auth: b), R (auth: c), T (auth: d), V (auth: H), X (auth: I), Z (auth: J), BA (auth: K), DA (auth: L)
Chain Length:1396
Number of Molecules:15
Biological Source:Human herpesvirus 3
Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 1
Gene (Uniprot):ORF20
Chain IDs:EA (auth: e), HA (auth: f), KA (auth: g), NA (auth: h), QA (auth: i)
Chain Length:483
Number of Molecules:5
Biological Source:Human herpesvirus 3
Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 2
Gene (Uniprot):ORF41
Chain IDs:FA (auth: j), GA (auth: o), IA (auth: k), JA (auth: p), LA (auth: l), MA (auth: q), OA (auth: m), PA (auth: r), RA (auth: n), SA (auth: s)
Chain Length:316
Number of Molecules:10
Biological Source:Human herpesvirus 3
Ligand Molecules
Primary Citation
Near-atomic cryo-electron microscopy structures of varicella-zoster virus capsids.
Nat Microbiol 5 1542 1552 (2020)
PMID: 32895526 DOI: 10.1038/s41564-020-0785-y

Abstact

Varicella-zoster virus (VZV) is a medically important human herpesvirus that causes chickenpox and shingles, but its cell-associated nature has hindered structure studies. Here we report the cryo-electron microscopy structures of purified VZV A-capsid and C-capsid, as well as of the DNA-containing capsid inside the virion. Atomic models derived from these structures show that, despite enclosing a genome that is substantially smaller than those of other human herpesviruses, VZV has a similarly sized capsid, consisting of 955 major capsid protein (MCP), 900 small capsid protein (SCP), 640 triplex dimer (Tri2) and 320 triplex monomer (Tri1) subunits. The VZV capsid has high thermal stability, although with relatively fewer intra- and inter-capsid protein interactions and less stably associated tegument proteins compared with other human herpesviruses. Analysis with antibodies targeting the N and C termini of the VZV SCP indicates that the hexon-capping SCP-the largest among human herpesviruses-uses its N-terminal half to bridge hexon MCP subunits and possesses a C-terminal flexible half emanating from the inner rim of the upper hexon channel into the tegument layer. Correlation of these structural features and functional observations provide insights into VZV assembly and pathogenesis and should help efforts to engineer gene delivery and anticancer vectors based on the currently available VZV vaccine.

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Primary Citation of related structures