6LFL image
Deposition Date 2019-12-03
Release Date 2020-09-02
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6LFL
Title:
Crystal structure of a class A GPCR
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:C-X-C chemokine receptor type 2,GlgA glycogen synthase,C-X-C chemokine receptor type 2
Gene (Uniprot):CXCR2, PAB2292
Mutations:L135W, A249E, G303A
Chain IDs:A
Chain Length:502
Number of Molecules:1
Biological Source:Homo sapiens, Pyrococcus abyssi (strain GE5 / Orsay)
Ligand Molecules
Primary Citation
Structural basis of CXC chemokine receptor 2 activation and signalling.
Nature 585 135 140 (2020)
PMID: 32610344 DOI: 10.1038/s41586-020-2492-5

Abstact

Chemokines and their receptors mediate cell migration, which influences multiple fundamental biological processes and disease conditions such as inflammation and cancer1. Although ample effort has been invested into the structural investigation of the chemokine receptors and receptor-chemokine recognition2-4, less is known about endogenous chemokine-induced receptor activation and G-protein coupling. Here we present the cryo-electron microscopy structures of interleukin-8 (IL-8, also known as CXCL8)-activated human CXC chemokine receptor 2 (CXCR2) in complex with Gi protein, along with a crystal structure of CXCR2 bound to a designed allosteric antagonist. Our results reveal a unique shallow mode of binding between CXCL8 and CXCR2, and also show the interactions between CXCR2 and Gi protein. Further structural analysis of the inactive and active states of CXCR2 reveals a distinct activation process and the competitive small-molecule antagonism of chemokine receptors. In addition, our results provide insights into how a G-protein-coupled receptor is activated by an endogenous protein molecule, which will assist in the rational development of therapeutics that target the chemokine system for better pharmacological profiles.

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Primary Citation of related structures