6LDL image
Deposition Date 2019-11-21
Release Date 2020-10-28
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6LDL
Keywords:
Title:
Crystal structure of CYP116B46-N(20-445) from Tepidiphilus thermophilus in complex with HEME
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.38 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome P450
Gene (Uniprot):Ga0061068_103196
Chain IDs:A
Chain Length:426
Number of Molecules:1
Biological Source:Tepidiphilus thermophilus
Primary Citation
Structural insight into the electron transfer pathway of a self-sufficient P450 monooxygenase.
Nat Commun 11 2676 2676 (2020)
PMID: 32472090 DOI: 10.1038/s41467-020-16500-5

Abstact

Cytochrome P450 monooxygenases are versatile heme-thiolate enzymes that catalyze a wide range of reactions. Self-sufficient cytochrome P450 enzymes contain the redox partners in a single polypeptide chain. Here, we present the crystal structure of full-length CYP116B46, a self-sufficient P450. The continuous polypeptide chain comprises three functional domains, which align well with the direction of electrons traveling from FMN to the heme through the [2Fe-2S] cluster. FMN and the [2Fe-2S] cluster are positioned closely, which facilitates efficient electron shuttling. The edge-to-edge straight-line distance between the [2Fe-2S] cluster and heme is approx. 25.3 Å. The role of several residues located between the [2Fe-2S] cluster and heme in the catalytic reaction is probed in mutagenesis experiments. These findings not only provide insights into the intramolecular electron transfer of self-sufficient P450s, but are also of interest for biotechnological applications of self-sufficient P450s.

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