6LAT image
Deposition Date 2019-11-13
Release Date 2019-12-04
Last Version Date 2025-07-02
Entry Detail
PDB ID:
6LAT
Title:
The cryo-EM structure of HEV VLP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein ORF2
Mutations:P162S,N200S,A511S,L569I
Chain IDs:A
Chain Length:477
Number of Molecules:1
Biological Source:Hepatitis E virus
Ligand Molecules
Primary Citation
Viral neutralization by antibody-imposed physical disruption.
Proc.Natl.Acad.Sci.USA ? ? ? (2019)
PMID: 31818956 DOI: 10.1073/pnas.1916028116

Abstact

In adaptive immunity, organisms produce neutralizing antibodies (nAbs) to eliminate invading pathogens. Here, we explored whether viral neutralization could be attained through the physical disruption of a virus upon nAb binding. We report the neutralization mechanism of a potent nAb 8C11 against the hepatitis E virus (HEV), a nonenveloped positive-sense single-stranded RNA virus associated with abundant acute hepatitis. The 8C11 binding flanks the protrusion spike of the HEV viruslike particles (VLPs) and leads to tremendous physical collision between the antibody and the capsid, dissociating the VLPs into homodimer species within 2 h. Cryo-electron microscopy reconstruction of the dissociation intermediates at an earlier (15-min) stage revealed smeared protrusion spikes and a loss of icosahedral symmetry with the capsid core remaining unchanged. This structural disruption leads to the presence of only a few native HEV virions in the ultracentrifugation pellet and exposes the viral genome. Conceptually, we propose a strategy to raise collision-inducing nAbs against single spike moieties that feature in the context of the entire pathogen at positions where the neighboring space cannot afford to accommodate an antibody. This rationale may facilitate unique vaccine development and antimicrobial antibody design.

Legend

Protein

Chemical

Disease

Primary Citation of related structures