6L9C image
Deposition Date 2019-11-08
Release Date 2020-04-29
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6L9C
Keywords:
Title:
Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4
Biological Source:
Source Organism:
Host Organism:
Method Details:
R-Value Free:
['0.18
R-Value Work:
['0.16
R-Value Observed:
['0.16
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phenylethylamine oxidase
Chain IDs:A (auth: X)
Chain Length:621
Number of Molecules:1
Biological Source:Arthrobacter globiformis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASA A ASP modified residue
E9C A TYR modified residue
Primary Citation
Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing.
Proc.Natl.Acad.Sci.USA 117 10818 10824 (2020)
PMID: 32371483 DOI: 10.1073/pnas.1922538117

Abstact

Recent advances in neutron crystallographic studies have provided structural bases for quantum behaviors of protons observed in enzymatic reactions. Thus, we resolved the neutron crystal structure of a bacterial copper (Cu) amine oxidase (CAO), which contains a prosthetic Cu ion and a protein-derived redox cofactor, topa quinone (TPQ). We solved hitherto unknown structures of the active site, including a keto/enolate equilibrium of the cofactor with a nonplanar quinone ring, unusual proton sharing between the cofactor and the catalytic base, and metal-induced deprotonation of a histidine residue that coordinates to the Cu. Our findings show a refined active-site structure that gives detailed information on the protonation state of dissociable groups, such as the quinone cofactor, which are critical for catalytic reactions.

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Primary Citation of related structures