6L94 image
Deposition Date 2019-11-08
Release Date 2020-11-11
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6L94
Keywords:
Title:
The structure of the dioxygenase ABH1 from mouse
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.29
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
I 4
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleic acid dioxygenase ALKBH1
Gene (Uniprot):Alkbh1
Chain IDs:A
Chain Length:402
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
ALKBH1 promotes lung cancer by regulating m6A RNA demethylation.
Biochem Pharmacol 189 114284 114284 (2021)
PMID: 33068553 DOI: 10.1016/j.bcp.2020.114284

Abstact

Lung cancer has surpassed breast cancer as the leading cause of cancer death in females in developed countries and the leading cause of cancer death in males. Despite extensive research on lung cancer, the pathogenesis of lung cancer is not fully understood. ALKBH1 is a 2-oxoglutarate and Fe (II)-dependent dioxygenase responsible for the demethylation of 6-methyladenine (m6A) in RNA and is essential to multiple cellular processes in human. Numerous recent studies suggest that ALKBH1 plays a role in tumorigenesis and tumor progression, but the role of ALKBH1 in lung cancer is largely unknown. In this study, we demonstrated that the expression levels of ALKBH1 in lung cancer tissues and cells were up regulated. The invasion and migration abilities of lung cancer cells were significantly suppressed in vitro upon the silencing of ALKBH1 while they were significantly promoted upon its overexpression. We next characterized the enzyme biochemically by analyzing the contribution of essential residues Y184, H231, D233, H287, R338, and R344 to its m6A demethylation activity. Lastly, our 3.1-Å crystal structure of mouse ALKBH1 revealed that the N-terminal domain of the protein forms close contacted with the core catalytic domain and might be responsible for the recognition of nucleic acid substrates. In summary, our combined cellular, biochemical, and structural results provide insight into the potential ALKBH1-based drug design for cancer therapies.

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Protein

Chemical

Disease

Primary Citation of related structures
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