6L93 image
Deposition Date 2019-11-08
Release Date 2020-03-18
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6L93
Title:
X-ray structure of the ligand-free human TRPV1 ankyrin repeat domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.47 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transient receptor potential cation channel subfamily V member 1
Gene (Uniprot):TRPV1
Chain IDs:A, B, C, D, E, F
Chain Length:280
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure determination of the human TRPV1 ankyrin-repeat domain under nonreducing conditions.
Acta Crystallogr.,Sect.F 76 130 137 (2020)
PMID: 32133998 DOI: 10.1107/S2053230X20001533

Abstact

TRPV1, a member of the transient receptor potential (TRP) channels family, has been found to be involved in redox sensing. The crystal structure of the human TRPV1 ankyrin-repeat domain (TRPV1-ARD) was determined at 4.5 Å resolution under nonreducing conditions. This is the first report of the crystal structure of a ligand-free form of TRPV1-ARD and in particular of the human homologue. The structure showed a unique conformation in finger loop 3 near Cys258, which is most likely to be involved in inter-subunit disulfide-bond formation. Also, in human TRPV1-ARD it was possible for solvent to access Cys258. This structural feature might be related to the high sensitivity of human TRPV1 to oxidants. ESI-MS revealed that Cys258 did not form an S-OH functionality even under nonreducing conditions.

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Primary Citation of related structures