6L8T image
Deposition Date 2019-11-07
Release Date 2020-02-26
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6L8T
Keywords:
Title:
Crystal structure of the Fab fragment of a humanized HBV therapeutic antibody
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.77 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Antibody heavy chain
Chain IDs:B (auth: H), D (auth: A), F (auth: C)
Chain Length:220
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody light chain
Chain IDs:A (auth: L), C (auth: B), E (auth: D)
Chain Length:219
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Structure guided maturation of a novel humanized anti-HBV antibody and its preclinical development.
Antiviral Res. 180 104757 104757 (2020)
PMID: 32171857 DOI: 10.1016/j.antiviral.2020.104757

Abstact

We have reported that E6F6, a mouse monoclonal antibody, is a promising treatment option for patients with chronic hepatitis B (CHB). A humanized E6F6 antibody B11 with affinity loss was obtained by CDR-grafting approach. To address this issue, in silico affinity maturation through scanning mutagenesis using CHARMM force field methods was performed on an predicted immune complex model of the B11:HBsAg. We chose four variants with top increased interaction energy for further characterization. The antibody huE6F6-1 within two point mutations (Heavy Chain: Asp65Val; His66Leu) was identified to restore the parental antibody's high binding affinity, neutralization activity, and potent efficacy of viral suppression in vivo. Crystal structure (1.8 Å resolution) based molecular docking proved more stabilized and compact hydrogen bond interactions formed in huE6F6-1.The smaller and dispersed HBV immune complexes of huE6F6-1 by electron microscopy suggested it will have the same therapeutic efficacy as the parental E6F6 mAb. Preclinical study and pharmacokinetics of huE6F6-1 demonstrated that it is a stable and desirable lead candidate to improve the clinical management of CHB. Notably, our structure guided approach may facilitate the humanization and affinity maturation of other rodent antibody candidates during drug development.

Legend

Protein

Chemical

Disease

Primary Citation of related structures