6L86 image
Deposition Date 2019-11-05
Release Date 2020-03-04
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6L86
Keywords:
Title:
The structure of SfaA
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.23 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
H 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Taurine catabolism dioxygenase
Chain IDs:A, B, C, D
Chain Length:315
Number of Molecules:4
Biological Source:Streptomyces thioluteus
Primary Citation
Pathway from N-Alkylglycine to Alkylisonitrile Catalyzed by Iron(II) and 2-Oxoglutarate-Dependent Oxygenases.
Angew.Chem.Int.Ed.Engl. 59 7367 7371 (2020)
PMID: 32074393 DOI: 10.1002/anie.201914896

Abstact

N-alkylisonitrile, a precursor to isonitrile-containing lipopeptides, is biosynthesized by decarboxylation-assisted -N≡C group (isonitrile) formation by using N-alkylglycine as the substrate. This reaction is catalyzed by iron(II) and 2-oxoglutarate (Fe/2OG) dependent enzymes. Distinct from typical oxygenation or halogenation reactions catalyzed by this class of enzymes, installation of the isonitrile group represents a novel reaction type for Fe/2OG enzymes that involves a four-electron oxidative process. Reported here is a plausible mechanism of three Fe/2OG enzymes, Sav607, ScoE and SfaA, which catalyze isonitrile formation. The X-ray structures of iron-loaded ScoE in complex with its substrate and the intermediate, along with biochemical and biophysical data reveal that -N≡C bond formation involves two cycles of Fe/2OG enzyme catalysis. The reaction starts with an FeIV -oxo-catalyzed hydroxylation. It is likely followed by decarboxylation-assisted desaturation to complete isonitrile installation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures